Plant MITE

SE2020627

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5829
Medicago truncatula
SE2020627
Mutator
M56
MtChr4:3369071-3369280
TTAGGCTTA
TAGGCTTAGGAGGAGTGTTATGGACACTCTCTTTTTAACACTCTTTGTAACATCCACTCTCTTATTGGGTGAAATCAATGTGGTTATCATACATTGGA

Secondary structure and sequence

TSD TIR

5'

3'

T                 T  T                A        G      C  C                  CA      TTA    A    -------   AAT
 TAGGCTTAGGAGGAGTG TA GGACACTCTCTTTTTA CACTCTTT TAACAT CA TCTCTTATTGGGTGAAAT  ATGTGG   TCAT CATT       GGA   
 ||||||||||||||||| || |||||||||||||||| |||||||| |||||| || ||||||||||||||||||  ||||||   |||| ||||       |||    
 ATTCGGATTCTCTTTAC AT CTTGTGAGAGAAAGAT GTGAGAGA ATTGTG GT AGAGGATAACCCACTTTG  TACACC   AGTG GTGA       CCT   
G                 C  C                A        G      A  A                  AA      TAG    -    AACACAT   AGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020627

TTAGGCTTAGGAGGAGTGTTATGGACACTCTCTTTTTAACACTCTTTGTAACATCCACTCTCTTATTGGGTGAAATCAATGTGGTTATCATACATTGGAAATGGATCCTACACAAAGTGGTGAGATCCACATAAGTTTCACCCAATAGGAGAATGAGTGTTAGAGAGAGTGATAGAAAGAGAGTGTTCCTACCATTTCTCTTAGGCTTAG

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