SE2020628

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5830
  • Medicago truncatula
  • SE2020628
  • Mutator
  • M130
  • MtChr5:17565086-17565738
  • AATAAATAG
  • GAGTGCAGATCTGCTCCAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAATAG           T        -----ACAA    - CTCCAGTTCCCAGTTAATGTAACTGATGTGTGACATGTGGCAGGGTCAGATTTCAACGGATCAGATTTTAAAAACAAAATCAGTTTTTTACTTTGACACAAAAAAAGAGCTCTGTGAGAGTAATAGCACGCTTCCGCCCTTCTCCGTCACTCCTCTCCGCCCCTTTCCCTCTTCTTCGTTAGTACGCCACCGTCCCTCTTCTTCGTTAGTACGCTGCCGTTATTCTCTCTCTTCTGCATTTCAATTGGAGGAATACTGTGTTATTCGTTGTTGTAAACATTATGT
         GAGTGCAGATC GCTCCAGT         AATT G                                                                                                                                                                                                                                                                                             
         ||||||||||| ||||||||         |||| |                                                                                                                                                                                                                                                                                             T
         CTCACGTCTAG CGAGGTCA         GGTA T                                                                                                                                                                                                                                                                                             
GATAAATAA           T        AATATTTTA    A TGACAGTACATGAAACTTGTCTAACTGCCGTGCACCGTTTTTGTTGTAGTTACCGAATCTAAAATTTAAACGTTTCATTCAATTTAATTTTTTTATCTTTACTAAAGAGAAGAGAAGAGGCAGCTTTGTTTTGTGCAAGTTTGAATTAAATGGTGATGAGTCGGGATGAGGTGGTGACTCGACAACATTGACGGGCGGCGACGGCGACAGTGCGATAATGTTCGAAAGTTAGTTATTGTTGTTGCTATAGAAAATAAACGTTATTGTTTGTAGTGTGACACACGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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