Plant MITE

SE2020634

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5836
Medicago truncatula
SE2020634
Mutator
M131
MtChr5:35145884-35146081
GAATGATTG
AATGATTGGGACACCACTTGTGTACCATTGGGATACCAATGTTATATAACATTGGTCAATGAAAGTGTGCCACATA

Secondary structure and sequence

TSD TIR

5'

3'

G   G   G                                                       A        ----------    GGAAG    AAAGAGGA
 AAT ATT GGACACCACTTGTGTACCATTGGGATACCAATGTTATATAACATTGGTCAATGAA GTGTGCCA          CATA     GTCT        
 ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||     ||||         
 TTA TAA CCTGTGGTGAACACATGGTAACCCTATGGTTACAATATATTGTAACTGGTTACTT TACACGGT          GTGT     TAGA        
G   G   G                                                       C        ATATTGTGAA    ACGTA    AAAGAGAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020634

GAATGATTGGGACACCACTTGTGTACCATTGGGATACCAATGTTATATAACATTGGTCAATGAAAGTGTGCCACATAGGAAGGTCTAAAGAGGAAAGAGAAAAGATATGCATGTGAAGTGTTATATGGCACATCTTCATTGGTCAATGTTATATAACATTGGTATCCCAATGGTACACAAGTGGTGTCCGAATGATTG

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