SE2020637

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5839
  • Medicago truncatula
  • SE2020637
  • Mutator
  • M1
  • MtChr2:28413232-28413643
  • TTTTATTTA
  • AGGTCAAATGCATCTAAAGATCCTTTAAGTTTTTCGTTTTTCTCAAAGTGGTCCTTTAAGTTTCAAAAGTCCCAAACAAGTCCTTTTAGTTTTTGAATCGTTTCAAACAAGTCTTTTTAGAGGATGATGATGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTTATTT                   A  C                                                C          C                                --TT    -- G     -      ---------   --  --  A  CAGATGATAACAACAAAGAGCATCATCCACCATTTGTCATGCCTA
        AGGTCAAATGCATCTAAAG TC TTTAAGTTTTTCGTTTTTCTCAAAGTGGTCCTTTAAGTTTCAAAAGTC CAAACAAGTC TTTTAGTTTTTGAATCGTTTCAAACAAGTCTT    TAGA  G ATGAT GATGAT         GAT  GA  TG TT                                             
        ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||    ||||  | ||||| ||||||         |||  ||  || ||                                             A
        TCCAGTTTACGTAGATTTC AG AAATTCAAAAAGCAAAAAGGGTTTCACCAGGAAATTCAAAGTTTTCAG GTTTGTTCAG AAAATCAAAAACTTAGCAAAGTTTGTTCAGGA    ATCT  C TATTA CTATTA         CTT  GT  AA AC                                             
ATTTATTT                   C  A                                                A          A                                TAGT    AT G     A      ACGAAAGAA   GA  AG  -  CATGGTTTAGACCGAAGATTGTGGGTGAATTTTAATCAGTAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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