Plant MITE

SE2020638

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5840
Medicago truncatula
SE2020638
Mutator
M14
MtChr7:34919659-34920023
TTTAAAATA
TTTAAAATAGGCAAAATTACACAATTAGTCCTTTAACTTTATTTTAGGTAACACTTTCGTCCTTTATCTTTTTTTTGTTACGATTTAGTCCTTTATGTTATAAAATGACAATATCTTATCATTTTTTATGAGA

Secondary structure and sequence

TSD TIR

5'

3'

        AAT                                                                    -                  A                   -C     A            ----------TTTT           TTT    T  C         --T    AAGA
   TTTAA   AGGCAAAATTACACAATTAGTCCTTTAACTTTATTTTAGGTAACACTTTCGTCCTTTATCTTTTTTTT GTTACGATTTAGTCCTTT TGTTATAAAATGACAATAT  TTATC TTTTTTATGAGA              TTTCAAAGAAA   GATT TC AGGCTTGTA   GATG    
   |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||  ||||| ||||||||||||              |||||||||||   |||| || |||||||||   ||||     
   AAATT   TCCGTTTTAATGTGTTAATCAGGGAATTGAAATAAAATCCATTGTGAAAGCAGGAAATAGAAAAAAAA CAGTGCTAAATCAGGAGA ACAATATTTTATTGTTGTA  AATAG AAAAAATACTTT              GAGGTTTTTTT   TTAG AG TTTGAGTAT   TTGC    
ATA     ---                                                                    A                  C                   TC     G            TTTTATTAGTTTTT           --T    T  -         CCG    ATTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020638

TTTAAAATAGGCAAAATTACACAATTAGTCCTTTAACTTTATTTTAGGTAACACTTTCGTCCTTTATCTTTTTTTTGTTACGATTTAGTCCTTTATGTTATAAAATGACAATATCTTATCATTTTTTATGAGATTTTTTTCAAAGAAATTTGATTTTCCAGGCTTGTATGATGAAGATTTACGTTGCCTATGAGTTTGATGATTTTTTTTTTGGAGTTTTTGATTATTTTTTTCATAAAAAAGGATAACTATGTTGTTATTTTATAACACAGAGGACTAAATCGTGACAAAAAAAAAGATAAAGGACGAAAGTGTTACCTAAAATAAAGTTAAGGGACTAATTGTGTAATTTTGCCTTTAAAATA

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