Plant MITE

SE2020641

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5843
Medicago truncatula
SE2020641
Mutator
M132
MtChr2:9550225-9550449
ATATATATA
ATATATATATATATATATGATTTTGCTATAAGCCACCGATGAAGGTGTCTTTTAGTAA

Secondary structure and sequence

TSD TIR

5'

3'

AT                    -            C   ---CG                    -------------CC      TCAAGGTGTGATTTCCACTTTTTAGTTATAACTTTGC
  ATATATATATATATATATGA TTTTGCTATAAG CAC     ATGAAGGTGTCTTTTAGTAA               CACACC                                     
  |||||||||||||||||||| |||||||||||| |||     ||||||||||||||||||||               ||||||                                      
  TATATATATATATATATACT AAAACGATATTC GTG     TACTTCCACAGAAAATCGTT               AAACGA                                     
                      T            T   TAAAA                    CAATAAGATACTCGT      TTTTCTGTGGTTGATTAAAAATACTTCCGCAGAAAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020641

ATATATATATATATATATATGATTTTGCTATAAGCCACCGATGAAGGTGTCTTTTAGTAACCCACACCTCAAGGTGTGATTTCCACTTTTTAGTTATAACTTTGCTAAAAGACGCCTTCATAAAAATTAGTTGGTGTCTTTTAGCAAATGCTCATAGAATAACTTGCTAAAAGACACCTTCATAAAATGTGTCTTATAGCAAAATTCATATATATATATATATAT

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