SE2020642

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5844
  • Medicago truncatula
  • SE2020642
  • Mutator
  • M133
  • MtChr3:7673482-7673732
  • TTATTTAAT
  • TTATTTAATGGGTTAATGGTGCTTTACCCCCTTATAATATAGGTCATTTTTTGTTTCCCCTCTGTAAAATATGTTTTTTTTTGGAATACCCCCCTAATAGGTCATAAAAAAACGA

Secondary structure and sequence

TSD    TIR
5'



3' 
    TT   T                       TA       G  C      T    -CC                       T          CC                     AAAAATTCTGC
 TTA  TAA GGGTTAATGGTGCTTTACCCCCT  TAATATA GT ATTTTT GTTT   CCTCTGTAAAATATGTTTTTTTT GGAATACCCC  TAATAGGTCATAAAAAAACGA           
 |||  ||| |||||||||||||||||||||||  ||||||| || |||||| ||||   ||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||           A
 AAT  ATT CCCAATTACCACGAAATGGGGGA  ATTATAT CA TAAAAA CAAA   GGGGACATTTTATATAAAAAAAA CCTTATGGGG  ATTATCCAGTATTTTTTTGCT           
T   TT   -                       -C       A  A      C    AAT                       -          -C                     GAAAAAAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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