SE2030643

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5845
  • Medicago truncatula
  • SE2030643
  • hAT
  • Hat27
  • MtChr1:27966892-27967619
  • CAAATAAT
  • TAGAGCTGTCAAAACGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAATAAT                         --    AT      CTGGCCCTAACGGGCTTCGGGCTTTATCGGACCGGGCCAAAAAACCCGGTTGGAAAACGGACTTGAAATATACTACCCAAGTCCGGCCCTACACGGGCCGCGGGCTTAATGGGCCGGCCCGTATTAAAAATTATATATTTTTTTTTTTTTTTAAAAAAAGTACTATAAAATACTCCTATAATTTTTTTTTATAAATAATATTTTTAATATGTTTAAATAATGCCTAGAACAAAAATAAATTGTAAACACTTTTGTACAAACGTCGTAAACTAAAACGGCGAGGAAAACAATTTTAAATAAATTAGATACGTTATGGTTA
        TAGAGCTGTCAAAACGGGCGGTCCG  GCCC  TTAGGG                                                                                                                                                                                                                                                                                                                               
        |||||||||||||||||||||||||  ||||  ||||||                                                                                                                                                                                                                                                                                                                                
        ATCTCGACAGTTTTGCCCGGCCCGG  TACC  CGGTCG                                                                                                                                                                                                                                                                                                                               
TAATAAAC                         CA    --      GGCAAATCGGGTTAATTAATATTCCGAACCCGGAATTTATAACTCGGGCTTAAAATTATCCCGAAAAATCGGGCCGGGATTTTTCGGGCGATGGGCAATCCCGATCGGGCTTGCCCGGCTCCCATCGGGCGATCGGGCGTATTGTTTTTTTTAGGATATTTAATATATATAAAATGTTTATTAAGAAATGAATCAACTAATAGTTTCATTATTTATTTTCACTTTTAAGTTACTTAATTGTGTTTATATGTACATTATATTTTAATATAAATGAGCAAAGCAATAAATATTAAAATTTCTAGCTTTTATATTTATAGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3