Plant MITE

SE2050646

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5848
Medicago truncatula
SE2050646
PIF/harbinger
To2
MtChr1:24741896-24742300
TTA
AGGCTTTGTTTGGGAGTTTGGAGGGGAAGGGAAAGAAAGG

Secondary structure and sequence

TSD TIR

5'

3'

TT            G                    A AA   CTTT      --       TAC       ATT     AATCTTTCAC       --- C   AGTAATTTTTTAGAGAATAATAAATTAATACTTATGATTAATATATTTTTAATTTTAAGAATATTATAACTACATAGATTAAATTTGAAGAATTCATGTAAACCCTCC
  AGGCTTTGTTTG GAGTTTGGAGGGGAAGGGAA G  AGG    GGAGGG  TTGGAAA   AGGGGAA   GGTAA          GTTTTTT   G AAG                                                                                                            
  |||||||||||| |||||||||||||||||||| |  |||    ||||||  |||||||   |||||||   |||||          |||||||   | |||                                                                                                             
  TCCGAAACAAAC CTCAAACCTCCCCTTCCCTT C  TCC    CCTCCC  AACTTTT   TTTCCTT   TCGTT          CTTCTTT   T ACT                                                                                                            
AT            G                    - CC   ----      CA       TTA       -CC     -------CAC       ATA -   GTAACTCCCCTTCCGAAACCCCCAAAGTAAAAAGAAGTATTATATTTTGGGAGGAGTAAACCCCCTGAGTTTTAAACATAACCTCCTCCCAAAACCCCCCAAAACCAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050646

TTAGGCTTTGTTTGGGAGTTTGGAGGGGAAGGGAAAGAAAGGCTTTGGAGGGTTGGAAATACAGGGGAAATTGGTAAAATCTTTCACGTTTTTTGCAAGAGTAATTTTTTAGAGAATAATAAATTAATACTTATGATTAATATATTTTTAATTTTAAGAATATTATAACTACATAGATTAAATTTGAAGAATTCATGTAAACCCTCCAACCAAAACCCCCCAAAACCCTCCTCCAATACAAATTTTGAGTCCCCCAAATGAGGAGGGTTTTATATTATGAAGAAAAATGAAACCCCCAAAGCCTTCCCCTCAATGTCATATATTTCTTCCACTTGCTCCTTCCTTTATTTTTTCAAACCCCTCCCCTCCCTTCCCTTCCCCTCCAAACTCGCAAACAAAGCCTTA

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