SE2020647

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5849
  • Medicago truncatula
  • SE2020647
  • Mutator
  • M14
  • MtChr7:31205370-31205702
  • TATATTTTA
  • TAGGCAAAATTACACTTTTAGTCCCTTAACTTAATTTCAGGTAACAATTTGGTCCTTTATCTTTTTTTCATTTCAATTTGGTCCTTTTTGTCCATTTTTATAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATATTT                                              A                                                        ACAT      G TTCAAATCTAATATTCTTATGCAAACATAGACGAGGATCATAGATTT
       TAGGCAAAATTACACTTTTAGTCCCTTAACTTAATTTCAGGTAACA TTTGGTCCTTTATCTTTTTTTCATTTCAATTTGGTCCTTTTTGTCCATTTTTATAT    TTTCAA C                                               
       |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||| |                                                
       ATCCGTTTTAATGTGAAAATCAGGGAATTGAATTAAAGTCCATTGT AAACCAGGAAATAGAAAAAAAGTAAAGTTAAACCAGGAAAAACAGGTAAAAGTATA    CTTAAA A                                               
ATTTTAT                                              C                                                        ----      - ATTCAAATTTTAAGTACTAAAATAAAAGAATACCAGAAAGTTAGAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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