Plant MITE

SE2020649

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5851
Medicago truncatula
SE2020649
Mutator
M2
MtChr1:1060500-1060702
TTTGGACCG
GGACCGGAGAAATGATATTTGAACAACCAT

Secondary structure and sequence

TSD TIR

5'

3'

TTT  A       AA  --A          A    -TTTTTT                  TTCTCTCTCATACTCACATTATCT      TTTCTCTCTCTATTGCTTT   TTTTGT
   GG CCGGAGA  TG   TATTTGAACA CCAT       ACAACTTTTGTGACAACT                        TTTTAC                   GGT      
   || |||||||  ||   |||||||||| ||||       ||||||||||||||||||                        ||||||                   |||       
   CC GGTTTCT  AC   ATAAACTTGT GGTG       TGTTGAAAACACTGTTGG                        AAAATG                   CCA      
  G  A       CA  ACA          A    TATACAC                  --------------------TTTT      --------TTTCCTTTACT   TCACTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020649

TTTGGACCGGAGAAATGATATTTGAACAACCATTTTTTTACAACTTTTGTGACAACTTTCTCTCTCATACTCACATTATCTTTTTACTTTCTCTCTCTATTGCTTTGGTTTTTGTGTCACTACCTCATTTCCTTTGTAAAATTTTGGTTGTCACAAAAGTTGTCACATATGTGGATGTTCAAATAACACAACTCTTTGGACCG

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