SE2050650

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5852
  • Medicago truncatula
  • SE2050650
  • PIF/harbinger
  • To1
  • MtChr8:9270612-9270952
  • TTA
  • AGAGCATCCACAATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TT                AGAC     ACTTTGAGGTCTTAAATGGGTCTCACATGGACACATCACTTTTTAATAATTTTTTAATAATAATACTTAATAGGTACTCAACCACTCCAATAGAGATCCTCTAACAAAAGGTCTAATAGGGTCCCACAAATATTATTTAATAGC
   AGAGCATCCACAATGG    CCTCA                                                                                                                                                
   ||||||||||||||||    |||||                                                                                                                                                C
   TCTCGTAGGTGTTACC    CTCCA                                                                                                                                                
AAT                ---G     GAAGTAGTAAATTCTAGACCATAGATTATCCATGGAGGTAACGCCTTTAAAAAAAAACCTCCAGAATTTTCTAGGTTACAGATTGAATTCTGGGGGTAAGAATTTACCCGGGTGTAGTGAAAAATAATTTTATTATAAAAAGTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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