SE2020651

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5853
  • Medicago truncatula
  • SE2020651
  • Mutator
  • M40
  • MtChr2:10772992-10773399
  • AAAATAGTT
  • AATAGTTGGCTTAATTGCATGTTTGGTCCCTTGTGTTTATTTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
AA      --       A             C                 ------------A      GTTGGTCATTTATATTTTAAAAGTTTCAAGTTGGTTCAATACGTTACTCACATTATAATAAGTTAGTTTCTTCTATCACTTGACTGTTTGAAGATTCGAGCCGACAATATGGACGATGAAATTTAACTTATTTAGAAAAGCAGC
  AATAGT  TGGCTTA TTGCATGTTTGGT CCTTGTGTTTATTTTAG             TTTTAA                                                                                                                                                
  ||||||  ||||||| ||||||||||||| |||||||||||||||||             ||||||                                                                                                                                                 
  TTGTTA  ACCGAAT AACGTACAAACTA GGAATACAAATAAAATC             GAAAAT                                                                                                                                                
        AA       G             C                 CAAAATTCAACCA      ACAAAATTTTCAAAATTCAACCAGTGAATGCAAAATTTCCAAAGTTCAACCAGGTTGTACAATAATGAGTACAACCTTATTCAATCAGGTAAGGCGCTGTACTATAACTCATATTATTTTATTTTATTAAAATTTTTTAAATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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