SE2020653

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5855
  • Medicago truncatula
  • SE2020653
  • Mutator
  • M19
  • MtChr5:9371041-9371484
  • TTCAAAAAA
  • AAGGGTTAAATATATTTTTGGTCTCTATAAATATGTCAACTTTTCGTTTTCGTCTCTCTAATTTTATTTTTTTCAACTTTTAATCCTCCAAAAGTTATTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TTCAAAA       A     A                        A     C     C      C   TT  A       C  C     A    CCA      A    TCTT -       A  A  CC   A    AAACTCATA    GAATTCATG       ATAA         G   A  T  TC     A             CCAAAAA  TT     TTTT
       AAGGGTT AATAT TTTTTGGTCTCTATAAATATGTCA CTTTT GTTTT GTCTCT TAA  TT TTTTTTT AA TTTTA TCCT   AAAGTT TTCA    C ATTTTTG TC CT  TTT AAGT         TGTA         TTTTTGA    AATTGTGCA AAA GT TA  ATATT TAAGAATCTCTCC       AA  AGAAT    
       ||||||| ||||| |||||||||||||||||||||||| ||||| ||||| |||||| |||  || ||||||| || ||||| ||||   |||||| ||||    | ||||||| || ||  ||| ||||         ||||         |||||||    ||||||||| ||| || ||  ||||| |||||||||||||       ||  |||||    A
       TTCCCAA TTATA AAAAACCAGAGATATTTATATAGT GAAAA CAAAA CAGAGA ATT  AA AAAGAAA TT AAAAT AGGG   TTTTAA AAGT    G TGAAAAC AG GA  AAA TTCA         ACAT         AAAAATT    TTAACACGT TTT CA AT  TATAA ATTTTTAGAGAGG       TT  TCTTA    
AAAAAAC       C     C                        A     A     T      A   TT  -       -  C     C    ATA      -    TATT A       C  G  TA   A    --ACCAAAA    ---AATAAA       -ACG         A   A  C  TT     C             -------  TT     TAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End