Plant MITE

SE2010654

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5856
Medicago truncatula
SE2010654
Tc1/Mariner
St37
MtChr2:20580439-20580731
TA
TATTCCCTCCGTCGTT

Secondary structure and sequence

TSD TIR

5'

3'

      C      G  -----T     -  AACCATTTA     AA   CG    TTAAAA -    --  - TGAAATAACAAATTTATTATATATATGTATAACTTTTATCAAATTACGCTTTGTGTGTAGATATATTTAATGTTAATATTTCACATT
TATTCC TCCGTC TT      TCTAT AC         ACAAA  GTA  GATA      A AAGT  TG T                                                                                       
|||||| |||||| ||      ||||| ||         |||||  |||  ||||      | ||||  || |                                                                                       T
ATAAGG AGGTAG GA      TTCTG TA         ATATT  TTT  TATT      T ATTA  CA G                                                                                       
      T      G  TTAGTG     A  --------A     --   --    ------ T    AA  G GATTTATATTTTGTAAATATTTTAAAATCTACGTGAATAATAAGTAAAAGGTGTGTACAGAGAATAATTATGATAGTTAAATAGTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010654

TATTCCCTCCGTCGTTTTCTATACAACCATTTAACAAAAAGTACGGATATTAAAAAAAGTTGTTGAAATAACAAATTTATTATATATATGTATAACTTTTATCAAATTACGCTTTGTGTGTAGATATATTTAATGTTAATATTTCACATTTCATGATAAATTGATAGTATTAATAAGAGACATGTGTGGAAAATGAATAATAAGTGCATCTAAAATTTTATAAATGTTTTATATTTAGGGACAAATTATTTTATTTTTTATAAATAGTCTTGTGATTAGGGATGGATGGAATA

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