Plant MITE

SE2020660

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5862
Medicago truncatula
SE2020660
Mutator
M27
MtChr1:16622664-16622853
TTATATTTA
ATATTTAGGGAAATGTTAACTAGTGTTTCGGGGCACTAGTTAAGGGCTTTAA

Secondary structure and sequence

TSD TIR

5'

3'

 TT    TT    AAA       T        -    C   AG       C     ---      ACCTATCATGAAAATATGTGTAATCATTGCATC
   ATAT  AGGG   TGTTAAC AGTGTTTC GGGG ACT  TTAAGGG TTTAA   ATGGTA                                 
   ||||  ||||   ||||||| |||||||| |||| |||  ||||||| |||||   ||||||                                  
   TATA  TCCC   ACAATTG TCACAGAG CCTC TGA  AATTCCT AAGTT   TCTTTA                                 
ATT    -T    AGA       C        G    T   GA       A     TTT      ATAAAATATTTTTTCAGTTTATAAAATTAAAGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020660

TTATATTTAGGGAAATGTTAACTAGTGTTTCGGGGCACTAGTTAAGGGCTTTAAATGGTAACCTATCATGAAAATATGTGTAATCATTGCATCGGAAATTAAAATATTTGACTTTTTTATAAAATAATTTCTTTTTTGAAATCCTTAAAGAGTTCTCCGGAGACACTCGTTAACAAGACCCTTATATTTA

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