Plant MITE

SE2010663

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5865
Medicago truncatula
SE2010663
Tc1/Mariner
St26
MtChr7:7570867-7571154
TA
TACTCCCTCCGTCTCACAATAGGTGCCCCTTTTGAGTTTT

Secondary structure and sequence

TSD TIR

5'

3'

                      -  G  C    TGA     --ACA   ---       GGAAATGATTAGTAATGTTGATTTTAATGGTAAAATATGTTTAATTTACTAAACCACCCTCATTAGTTATAGTTAGTGGAGTAGTGTT
TACTCCCTCCGTCTCACAATAG GT CC CTTT   GTTTT     CGA   CTATTAA                                                                                        
|||||||||||||||||||||| || || ||||   |||||     |||   |||||||                                                                                        A
ATGAGGGAGGCAGAGTGTTATC CA GG GAAA   TAAAA     CAG   TTACTAA                                                                                        
                      A  -  A    TGA     AGAAA   AGA       AGAGAAAATGTTATAGTTATGTTGTAAATAATAATAAAAGGTAATTGTATGGGAATAAATAACGTAAAGTTAGTAGATTGATGAGGTG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010663

TACTCCCTCCGTCTCACAATAGGTGCCCCTTTTGAGTTTTACACGACTATTAAGGAAATGATTAGTAATGTTGATTTTAATGGTAAAATATGTTTAATTTACTAAACCACCCTCATTAGTTATAGTTAGTGGAGTAGTGTTAGTGGAGTAGTTAGATGATTGAAATGCAATAAATAAGGGTATGTTAATGGAAAATAATAATAAATGTTGTATTGATATTGTAAAAGAGAAATCATTAGAGACAAAGAAAAATAGTAAAGAGGACACTATTGTGAGACGGAGGGAGTA

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