Plant MITE

SE2020664

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5866
Medicago truncatula
SE2020664
Mutator
M24
MtChr7:8198671-8198974
TAATTTCTA
TAGGGTTAATAGTGTTTTTCACTCCTGTAATATATGTTATTTCCGGTTTTCGCCCCTATAAAATTTTCAGTTTAATTTGCACCCTCATAAAATTTTTATTTTCCGGAAAACACCCTTAATAGACCATTCA

Secondary structure and sequence

TSD TIR

5'

3'

TAATTTC                                          -   G                     CA    A            A                C                  A    --   AAAACCAAAATTTA
       TAGGGTTAATAGTGTTTTTCACTCCTGTAATATATGTTATTT CCG TTTTCGCCCCTATAAAATTTT  GTTT ATTTGCACCCTC TAAAATTTTTATTTTC GGAAAACACCCTTAATAG CCAT  TCA              
       |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||  |||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||||  |||               
       ATCCCAATTATCACAAAAAGTGGGGACATTATATACAGTAAA GGC AAAAGCGGGGATATTTTAAAA  CAAA TAAACGTGGGAG ATTTTAAAAATAAAAG CCTTTTGTGGGGATTATC GGTA  AGT              
ATCTTTA                                          A   -                     AC    C            C                A                  C    AA   CTTAAAAAAAAGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020664

TAATTTCTAGGGTTAATAGTGTTTTTCACTCCTGTAATATATGTTATTTCCGGTTTTCGCCCCTATAAAATTTTCAGTTTAATTTGCACCCTCATAAAATTTTTATTTTCCGGAAAACACCCTTAATAGACCATTCAAAAACCAAAATTTATTGAAAAAAAATTCTGAAAATGGCCTATTAGGGGTGTTTTCCAGAAAATAAAAATTTTACGAGGGTGCAAATCAAACCAAAAATTTTATAGGGGCGAAAACGGAAAATGACATATATTACAGGGGTGAAAAACACTATTAACCCTAATTTCTA

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