SE2020668

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5870
  • Medicago truncatula
  • SE2020668
  • Mutator
  • M2
  • MtChr4:2299639-2299846
  • TTTAAAATA
  • TTTAAAATAGAGAAATGATATTTGTACAACCATTTTCGTACAATTTTTGTACAACTTT

Secondary structure and sequence

TSD    TIR
5'



3'
        AAT    A           T     CA    CG           -T        CTCTCTCATACTCACAT  TCTTCTTATTCTCTCTCTTCCTTTTTCTCTCT
   TTTAA   AGAG AATGATATTTG ACAAC  TTTT  TACAATTTTTG  ACAACTTT                 TA                                
   |||||   |||| ||||||||||| |||||  ||||  |||||||||||  ||||||||                 ||                                A
   AAATT   TCTC TTACTATAAAC TGTTG  AAAA  ATGTTGAAAAC  TGTTGGAA                 GA                                
ATA     ---    A           T     -A    CG           CC        -----------CAACAC  GAGAAAAGTAACCATTTTTTTTTTTTTGTTAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End