SE2010669

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5871
  • Medicago truncatula
  • SE2010669
  • Tc1/Mariner
  • St14
  • MtChr1:20173036-20173334
  • TA
  • TACTCCCTCTGTCCCTAATTATAAGACCCTTTTGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                   AAAAATAACGGG   TA -    GTGGATATTTGTATTAAATATGTTTGTAATTACTATTGTTTTTACAATTTTATCCTTTAAGAGAGAGAGGTGGTTTATGTTTTCAACATGTTATT
TACTCCCTCTGTCCCTAATTATAAGACCCTTTTGA            AAT  A GATA                                                                                               
|||||||||||||||||||||||||||||||||||            |||  | ||||                                                                                               T
ATGAGGGAGGCAGGGATTAATATTCTGGGAAAACT            AAA  A AGGG                                                                                               
                                   -----CTTAAAA   -- C    AAAAATATTCTGGGGAAACAATAAAGGTTGATATAATTAATAAAGAAATGTATGTACGGGGATAAATAATATGTAGAAAAAGAAGTTAGTCGTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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