Plant MITE

SE2050672

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5874
Medicago truncatula
SE2050672
PIF/harbinger
To22
MtChr3:14600940-14601706
TAG
TAGGGGGCGTTTGTTTCAGG

Secondary structure and sequence

TSD TIR

5'

3'

   -    C         -   -AAT    AAA   A       AATAACTTACCTGGGAATAAAGTAGTGGGAAGTTTATTCCTGGGTATTTTAAAAAAAAGTGTTTGGTTAGTATTTTAATTTTTCAGGAATATTTTCAAAAAATGTTCCCATAAATAGCTAATTGTTGTTTAGTTTAGAATATATATTCCTAGAAAAAACATGATACAGTTACAAAAATACCTCTACCTTGTTTCTAAATCAATTTGAATTTATTTTACTACATTTTATTTTCATTATAACTTGAAGCATTTGAAAATACACCATGAAATAAAATTATGTTTTCATATAGTTGATTGATAGAATATAGTTGATTGATATAATAGAACAATATTGTTGAAAACTT
TAG GGGG GTTTGTTTC AGG    TCAT   TTA TTCCAGG                                                                                                                                                                                                                                                                                                                                                       
||| |||| ||||||||| |||    ||||   ||| |||||||                                                                                                                                                                                                                                                                                                                                                        
ATC CCCC CAAACAAAG TCC    TTTT   AAA TAAGGAC                                                                                                                                                                                                                                                                                                                                                       
   T    A         G   AATA    ---   -       CCTTATACTCCTACCCTTACGTGAAAGGGTACAAACCATCTTCCATTTTCTTTTTATATGGACCCTTGTTTAATATGGGTCCTTTAAAAAATTGGGTACTAGAGGGATAAAAATAAGGGTACTTTTTCCTCAACCTTACAAAATAAGGATCTTTACTGTAAACGGAACGATGTACTTTTGGGGTGATGGTGGTACAAAAAAGTTGACGGTTAATTAAAGATAAAAAAAGAAAATGTACGAGATGTAGTTCTGTAACAATATTACATACAATAATATACATTAAGTAGATAATAAAGAAATACAAGAAAAACCAAACACGTTTTTGTATAAATACACAGATAAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050672

TAGGGGGCGTTTGTTTCAGGAATTCATAAATTAATTCCAGGAATAACTTACCTGGGAATAAAGTAGTGGGAAGTTTATTCCTGGGTATTTTAAAAAAAAGTGTTTGGTTAGTATTTTAATTTTTCAGGAATATTTTCAAAAAATGTTCCCATAAATAGCTAATTGTTGTTTAGTTTAGAATATATATTCCTAGAAAAAACATGATACAGTTACAAAAATACCTCTACCTTGTTTCTAAATCAATTTGAATTTATTTTACTACATTTTATTTTCATTATAACTTGAAGCATTTGAAAATACACCATGAAATAAAATTATGTTTTCATATAGTTGATTGATAGAATATAGTTGATTGATATAATAGAACAATATTGTTGAAAACTTGAATAGACACATAAATATGTTTTTGCACAAACCAAAAAGAACATAAAGAAATAATAGATGAATTACATATAATAACATACATTATAACAATGTCTTGATGTAGAGCATGTAAAAGAAAAAAATAGAAATTAATTGGCAGTTGAAAAAACATGGTGGTAGTGGGGTTTTCATGTAGCAAGGCAAATGTCATTTCTAGGAATAAAACATTCCAACTCCTTTTTCATGGGAATAAAAATAGGGAGATCATGGGTTAAAAAATTTCCTGGGTATAATTTGTTCCCAGGTATATTTTTCTTTTACCTTCTACCAAACATGGGAAAGTGCATTCCCATCCTCATATTCCCAGGAATAAATTTTATAACCTGGAAACAAACACCCCTCTA

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