Plant MITE

SE2020678

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5880
Medicago truncatula
SE2020678
Mutator
M2
MtChr5:8782015-8782217
TTATTTATA
AGAGAAATGATATTTGAACATCCATTTTGTGACAACTTTTGTGACAACT

Secondary structure and sequence

TSD TIR

5'

3'

TTATTTAT    AAA  A          T         --        T  T       TTCTCTCTCATACTCACATCATATTCTCATTTTCTCTCTCTATTGCTT   TTTTTGTGCCA
        AGAG   TG TATTTGAACA CCATTTTGT  GACAACTT TG GACAACT                                                TGG           
        ||||   || |||||||||| |||||||||  |||||||| || |||||||                                                |||            
        TCTC   AC ATAAACTTGT GGTAAAACA  CTGTTGAA AC CTGTTGG                                                TCT           
ATATTTAT    CTC  A          T         TC        C  C       -------------------------------------TTTTATATCTT   TTACACTCAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020678

TTATTTATAGAGAAATGATATTTGAACATCCATTTTGTGACAACTTTTGTGACAACTTTCTCTCTCATACTCACATCATATTCTCATTTTCTCTCTCTATTGCTTTGGTTTTTGTGCCAAGACTCACATTTCTTTCTATATTTTGGTTGTCCCACAAGTTGTCCTACAAAATGGTTGTTCAAATAACACTCCTCTTATTTATA

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