Plant MITE

SE2010679

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5881
Medicago truncatula
SE2010679
Tc1/Mariner
St1
MtChr8:35965824-35966233
TA
TACTCCCTCCGTCCCTTAATAGATAACCTAGTTGAC

Secondary structure and sequence

TSD TIR

5'

3'

    C                   A           -    TACATTATTGACTTGACATACTTTGACCATACTTTTCTACTAATTCACAAAGATAAATAATACTCCCTCTGGTCCTATATATAAGAAACAATTTACTTTTTTGATTCAGTGGATAATTGATGTATTTGGTCTATTTCTAGGCTAGATACATCAATTATTGAATG
TACT CCTCCGTCCCTTAATAGAT ACCTAGTTGAC AATA                                                                                                                                                                    
|||| ||||||||||||||||||| ||||||||||| ||||                                                                                                                                                                    A
ATGA GGAGGCAGGGAGTTATCTA TGGATCAACTG GACT                                                                                                                                                                    
    A                   C           A    GTGTGAATGGTTACGTATACAAAATAGAAACTATAGAAGTTAATAGATAATTTTTTTTAATATTTTTAAATTATAAAATTTTTATAAGTAGTTCTGCTTAGGTTGTTGTAGAATGTACTATGATGGAGGCCAGGATAAATATTCTTTTTTAACTAAAAAATATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010679

TACTCCCTCCGTCCCTTAATAGATAACCTAGTTGACAATATACATTATTGACTTGACATACTTTGACCATACTTTTCTACTAATTCACAAAGATAAATAATACTCCCTCTGGTCCTATATATAAGAAACAATTTACTTTTTTGATTCAGTGGATAATTGATGTATTTGGTCTATTTCTAGGCTAGATACATCAATTATTGAATGAATATAAAAAATCAATTTTTTCTTATAAATAGGACCGGAGGTAGTATCATGTAAGATGTTGTTGGATTCGTCTTGATGAATATTTTTAAAATATTAAATTTTTATAATTTTTTTTAATAGATAATTGAAGATATCAAAGATAAAACATATGCATTGGTAAGTGTGTCAGAGTCAACTAGGTCATCTATTGAGGGACGGAGGAAGTA

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