SE2020683

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5885
  • Medicago truncatula
  • SE2020683
  • Mutator
  • M92
  • MtChr4:39352845-39353161
  • AATTTTAGG
  • AGGCTAAAGTGCACTTTTCGCCCCATATGTTTCAAAATATTGCGATTTTGGCCCCCTATTAAAAAAAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATTTT        G G            CA  T          A                               ACA   -------      TCCTTTATCCCAAAATTGCTGAGAAGACGCCATGTATCCCAAAAAAGGGGTCATAATCGCAACTTTTG
      AGGCTAAA T CACTTTTCGCCC  TA GTTTCAAAAT TTGCGATTTTGGCCCCCTATTAAAAAAAATG   ATT       TTGGCC                                                                    
      |||||||| | ||||||||||||  || |||||||||| |||||||||||||||||||||||||||||||   |||       ||||||                                                                    T
      TCCGATTT A GTGAAAAGCGGG  GT CAAAGTTTTA AACGCTAAAACCGGGGGATAATTTTTTTTAC   CGT       GGGGAT                                                                    
TTTAAT        G A            AG  T          C                               ---   TTTCACT      ACAAATCCCTTTATACGATAAAACTGGAGGATTGTATTCCCTTTATACGAAAAACTGGGGAATAGAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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