SE2020688

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5890
  • Medicago truncatula
  • SE2020688
  • Mutator
  • M55
  • MtChr6:13251656-13252057
  • CGAAACAAG
  • GGCCAAATACCATTTTTGGTCTTTTAGTTTGACAGAATTCTCAAGTTAGTTTTTAAGTTTCGAAAGTTTTAAATAAGTCCTTTTAGTTTGACAAAATTCCCAAGTTAGTCTTCAAGTTTCAAATAGGTCCTTTTAGTTTGACAGAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
CGAAACAA              T      -           C      C           -                        A               CAA    C             ----------C                C        T  CA     CCCAAGTTA   -  TTAA                  TAAAA
        GGCCAAATACCATT TTGGTC TTTTAGTTTGA AGAATT TCAAGTTAGTT TTTAAGTTTCGAAAGTTTTAAATA GTCCTTTTAGTTTGA   AATT CCAAGTTAGTCTT           AAGTTTCAAATAGGTC TTTTAGTT GA  GAATT         GTC CT    GTTTCAAAAGTTTCAAAT     
        |||||||||||||| |||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||   |||| |||||||||||||           |||||||||||||||| |||||||| ||  |||||         ||| ||    ||||||||||||||||||     G
        CCGGTTTATGGTGA AACCAG AAAATCAAACT TCTTAA GGTTCAATCAG AAATTCAAAGCTTTCAAAATTTAT CAGGAAAATCAAACT   TTAA GGTTCAATCAGGA           TTCAAAGTTTATCCAG AAAGTCAA CT  TTTGA         CAG GG    TAAAGTTTTCAAAGTTTA     
ACAAAGCG              T      G           A      A           G                        C               ATC    A             AATTCAAAATT                T        -  -A     TAAAAGTGG   T  ----                  TCCAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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