SE2020689

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5891
  • Medicago truncatula
  • SE2020689
  • Mutator
  • M135
  • MtChr1:12875760-12876429
  • TATATATAT
  • TATATATATATGGGATAGGATCAAATGACATCATGGTGTCAAATTAAATTTGACACCAAATCATAACCATTAATTCAACTTTAATCCAACGTCTATCATCAATTCATTAAATGCTCACATGCTTGATCAAATTATCCAAATTTTAATTTTAGAAACAATTTTTCTTTCTTCTCTTGATTAATTATTTACC

Secondary structure and sequence

TSD    TIR
5'



3'
           T                      T                      C     A              A        CA      A       T                  C    T     T                      C     -         C                   AAAAA   TC    --GTA     A          ACACTATTCCCCGTCATCCTTGTTTTTTTTAGAAACCTTTTTTATTTTTATTTTTCTTATATGAACCCAAAGAAATTGATTTATAAAGAGCACCAGAGATAATTATTGAATG
 TATATATATA GGGATAGGATCAAATGACATCA GGTGTCAAATTAAATTTGACAC AAATC TAACCATTAATTCA CTTTAATC  ACGTCT TCATCAA TCATTAAATGCTCACATG TTGA CAAAT ATCCAAATTTTAATTTTAGAAA AATTT TTCTTTCTT TCTTGATTAATTATTTACC     TTC  TATG     TTATT TGATTTATTT                                                                                                                
 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| ||||||||  |||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||     |||  ||||     ||||| ||||||||||                                                                                                                A
 ATATATATAT TCCTATCCTAGTTTATTGTGGT CCACAGTTTAATTTAAACTGTG TTTAG ATTGGTAATTAGGT GAAATTAG  TGCAGA AGTAGTT AGTAATTTACGAGTGTAC AACT GTTTA TAGGTTTAAAATTAAAATCTTT TTAAA AAGGAAGAA AGAACTAATTAATGAATGG     AAG  ATAT     GGTAA ACTAAAGAGG                                                                                                                
T          -                      T                      A     G              -        AC      G       T                  A    T     T                      A     T         A                   --CAA   TA    AAAAC     -          ATGATTAAAAAAAACCTCTAAGATAAAAAATGATTAGAAACATAGCCCACAAGATCGTAAACACAAAACGAAAGCGAATTATCGTATACAAGAAAAATTAAAAAACCACGTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End