Plant MITE

SE2030690

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5892
Medicago truncatula
SE2030690
hAT
Hat9
MtChr1:21609705-21609891
CTTATATT
TATATTCTATGAAGCACGAATAC

Secondary structure and sequence

TSD TIR

5'

3'

CT    TT            A    TCCTC    TAG   T T -    TGT       --------      TGTCCGACACCGACACTTGTAATTACATT
  TATA  CTATGAAGCACG ATAC     GGAT   GCG G C CTGG   TGAACAT        GTGTCG                             
  ||||  |||||||||||| ||||     ||||   ||| | | ||||   |||||||        ||||||                             G
  ATAT  GATACTTCGTGC TATG     CCTG   TGC C G GGCC   GCTTGTG        GCTGTG                             
TT    TC            C    -----    ---   - T T    TGT       ACTGTGCA      TCGATTATTAAACTTTTTTAGTGTATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030690

CTTATATTCTATGAAGCACGAATACTCCTCGGATTAGGCGTGTCCTGGTGTTGAACATGTGTCGTGTCCGACACCGACACTTGTAATTACATTGAATTATGTGATTTTTTCAAATTATTAGCTGTGTCGACGTGTCAGTGTTCGTGTCCGGTGTCCGTGTCCGTATCCGTGCTTCATAGCTTATATT

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