Plant MITE

SE2030692

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5894
Medicago truncatula
SE2030692
hAT
Hat4
MtChr3:33163821-33164412
GCGGTAGC
GC

Secondary structure and sequence

TSD TIR

5'

3'

  GGTA       T                C    TAC G     TACGACCTGGCCTGTTTTGGCCTGGCCTGGCCTGGACTGTTTAGTAGATAAGCCTAGGCTTAGGCCTTTTAGAAAGTCTGTTTAGTTAAATAGGCCAAACTTAGGCTTCAAAAAAAGACTGTTAAGCCTAATAGGCCGGCCTATTAATACTTATTTATTAAAAAATATTTTTTTATATTAAAATAATTGCATATATTAAAAATATAAACATCTTTTTCTCTATCTATTAGTCCCTTAATATGCTTTGTTGTTA
GC    GCTAGGG TGGGAATAGGCCAGGC GGCC   A GGGCC                                                                                                                                                                                                                                                             
||    ||||||| |||||||||||||||| ||||   | |||||                                                                                                                                                                                                                                                             T
CG    CGATCCC ACCCTTATCCGGTCCG ATCC   G GTCCG                                                                                                                                                                                                                                                             
  ATGG       C                -    --- -     AAACTATCCGGACTCGGACCGGATGCTTTATTTAGTGTTCGGACTCGGACCGGATACCGGATAGTATCCGGCAAAAAGATCCGGACCGGACCGGATAAATTTTCGGACCTGACCGGACTTTCGGATGAAGTGTAATTCCGGTAGTTTATCAAGTAAACCGGATGATTTATCCAATTTGTACAGAATTTCGGATGAATTTTCGGATAAAGTGATCTTCATTTAAAGTTGATCTAATTTCGGATGTATTTTCGGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030692

GCGGTAGCTAGGGTTGGGAATAGGCCAGGCCGGCCTACAGGGGCCTACGACCTGGCCTGTTTTGGCCTGGCCTGGCCTGGACTGTTTAGTAGATAAGCCTAGGCTTAGGCCTTTTAGAAAGTCTGTTTAGTTAAATAGGCCAAACTTAGGCTTCAAAAAAAGACTGTTAAGCCTAATAGGCCGGCCTATTAATACTTATTTATTAAAAAATATTTTTTTATATTAAAATAATTGCATATATTAAAAATATAAACATCTTTTTCTCTATCTATTAGTCCCTTAATATGCTTTGTTGTTATAGGCTTTTATGTAGGCTTTAATCTAGTTGAAATTTACTTCTAGTGAAATAGGCTTTTAAGTAGGCTTTAAGACATGTTTAACCTATTTAGTAGGCCAAATGAACTATTTGATGGCCTTAATGTGAAGTAGGCTTTCAGGCCAGTCCAGGCTTTTAAATAGGCCAGGCCAGGCCTAGAAAAACGGCCTATGATAGGCCATAGGCCAGGCTCAGGCTTGTGATTTATTTCGTAGGCCAGGCTCAGGCCTATCAAAGCCTGGCCTAGCCTGGCCTATTCCCACCCCTAGCGGTAGC

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