Plant MITE

SE2020693

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5895
Medicago truncatula
SE2020693
Mutator
M2
MtChr4:28150482-28150682
TTACAATAA
TAAGAGAAATGATATTTGAACAACCATTTTTTACAACTTTTGTGACAATT

Secondary structure and sequence

TSD TIR

5'

3'

TTACAA      AAA  A          A    --T   T                  -TTCTCTCT  -------------TACT    -TT   TTTTTACTTTCTC
      TAAGAG   TG TATTTGAACA CCAT   TTT ACAACTTTTGTGACAATT         CA                 CACA   ATC             
      ||||||   || |||||||||| ||||   ||| ||||||||||||||||||         ||                 ||||   |||              
      ATTCTC   AC ATAAACTTGT GGTA   AAA TGTTGAAAACACTGTTGG         GT                 GTGT   TGG             
AATAAC      AAC  A          A    TAT   C                  TTTTAAAAT  TCCTTTACTCCATCACT    TTT   TTTCGTTATCTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020693

TTACAATAAGAGAAATGATATTTGAACAACCATTTTTTACAACTTTTGTGACAATTTTCTCTCTCATACTCACATTATCTTTTTACTTTCTCTCTCTATTGCTTTGGTTTTTGTGTCACTACCTCATTTCCTTGTAAAATTTTGGTTGTCACAAAAGTTGTCAAATATATGGATGTTCAAATAACACAACTCTTACAATAA

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