SE2020696

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5898
  • Medicago truncatula
  • SE2020696
  • Mutator
  • M138
  • MtChr6:19965681-19966052
  • TGGATTTTA
  • TGGAGTAAATCAGCATTTCGGTCCTTGATATTGTAAGAGTC

Secondary structure and sequence

TSD    TIR
5'



3'
TGGATTTTA G          G     C         T      AGA   AAGT               A   ACAAAA  A   ATC    C        A     CA   A     TTTGT  C      -      -ATAT    ----     A   ATCCATGATCACTGAAAAATTTAAAGATTG
         T GAGTAAATCA CATTT GGTCCTTGA ATTGTA   GTC    AATTTAGTTCCTTAA TTT      TA CAA   AGTC TTTAAATT AATAA  CCA TCAAT     CA TCGTTT TTCAAA     CTCT    TTAGT ATC                              
         | |||||||||| ||||| ||||||||| ||||||   |||    ||||||||||||||| |||      || |||   |||| |||||||| |||||  ||| |||||     || |||||| ||||||     ||||    ||||| |||                              A
         G TTTATTTAGT GTAAA TCAGGAATT TAACAT   CAG    TTAAATCAGGGAGTT AAA      AT GTT   TCAG GAATTTGA TTGTT  GGT AGTTA     GT AGTAAA AAGTTT     GAGG    AAAAC ACG                              
TGTATTTTA G          A     A         T      AAC   CCAT               A   CACTTG  C   AAA    A        C     AC   C     ----T  A      T      AAATT    TGTT     -   AATAAAATAACGTTGTTTTCTGATAAGTTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End