SE2020701

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5903
  • Medicago truncatula
  • SE2020701
  • Mutator
  • M140
  • MtChr6:1261980-1262347
  • AAATTTTAG
  • TTTAGGCTTAATAGCAGTTTTGATCCTCTAAGTATCATAAAGTTGCGATTTTGGCCCCTAATAAAGTAAAATACAGTTCAGCCCCCTAAGTACTGTCCCTTTTGCAATTGTGCCCCCGGACTAATTTTGACCAAGTCAATGTTGATCTGGACGACGTGTGTAATTTTTTTTAATAATTAAAAAAAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
AAAT    G                 A      A       TA                -                                                   --A        CCG A               T          C      A       ----------            T
    TTTA GCTTAATAGCAGTTTTG TCCTCT AGTATCA  AAGTTGCGATTTTGGC CCCTAATAAAGTAAAATACAGTTCAGCCCCCTAAGTACTGTCCCTTTTGCA   TTGTGCCC   G CTAATTTTGACCAAG CAATGTTGAT TGGACG CGTGTGT          AATTTTTTTTAA 
    |||| ||||||||||||||||| |||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||   | ||||||||||||||| |||||||||| |||||| |||||||          |||||||||||| A
    AAAT CGAATTATCGTCAAAAC GGGGGA TCATAGT  TTCAACGCTAAAACTG GGGATTGTTTTATTTTATGTTAGGTCGGGGGATTCATGACAGGGAAAACGT   AACACGGG   C GGTTAAAACTGGTTC GTTACGATTG ACCTGC GTACGCA          TTAAAAAAAATT 
TTTT    A                 C      C       CC                T                                                   CAA        -TA -               T          C      G       CATTTTTTTA            A
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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