Plant MITE

SE2020702

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5904
Medicago truncatula
SE2020702
Mutator
M141
MtChr4:34295971-34296235
TATAAAATA
ATAGAGTGAAAGATCCAAATCAGTTTTTCACAATTTTTTCGTAGGTCAATTTAGTTCTTGACAAAAAATAAACACAAATTAGTCCCTGATATTTATATATTAGGAGCACATTAGCCTCTCTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATAAA          A A     A                    C  A                         -     AC         CC        A         A   C     CC        ACA
      ATAGAGTGAA G TCCAA TCAGTTTTTCACAATTTTTT GT GGTCAATTTAGTTCTTGACAAAAAA TAAAC  AAATTAGTC  TGATATTT TATATTAGG GCA ATTAG  TCTCTAAT   
      |||||||||| | ||||| |||||||||||||||||||| || ||||||||||||||||||||||||| |||||  |||||||||  |||||||| ||||||||| ||| |||||  ||||||||   A
      TATCTCACTT C GGGTT AGTCAGGGAGTGTTAAAAGG CA CCAGTTAAGTTAGGAATTGTTTTTT ATTTG  TTTAATCAG  ATTGTAAA GTATGGTCT TGT TAATC  AGAGATTG   
ATAAAA          C -     A                    T  C                         T     GA         TA        A         C   T     --        ATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020702

TATAAAATAGAGTGAAAGATCCAAATCAGTTTTTCACAATTTTTTCGTAGGTCAATTTAGTTCTTGACAAAAAATAAACACAAATTAGTCCCTGATATTTATATATTAGGAGCACATTAGCCTCTCTAATACAATTAGTTAGAGACTAATTTGTCTCTGGTATGAAAATGTTAATGACTAATTTAGGTTTATTTTTTTGTTAAGGATTGAATTGACCCACTGGAAAATTGTGAGGGACTGAATTGGGCCTTCACTCTATAAAATA

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