Plant MITE

SE2020703

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5905
Medicago truncatula
SE2020703
Mutator
M2
MtChr5:38528340-38528541
TTTTTGTTT
GAGTAGTGATATTTGAACAACTCTTTTGATACAATTTTTGGGACAACCTTGTTGTGTTCTCTTCTTATTGGTC

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTGTTT   T           A      -C     A           GG        G  ----------     C          -GG  AAAAACAATAGAGA
         GAG AGTGATATTTG ACAACT  TTTTG TACAATTTTTG  ACAACCTT TT          GTGTT TCTTCTTATT   TC              
         ||| ||||||||||| ||||||  ||||| |||||||||||  |||||||| ||          ||||| ||||||||||   ||               
         CTC TTACTATAAAC TGTTGG  AAAAC ATGTTGAAAAC  TGTTGGAA AG          TATAA AGAAGAATAA   AG              
TTTGTTTTT   T           A      TA     -           -A        G  AGAGTATGAG     T          GAG  AGAAGGAGAAAGAG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020703

TTTTTGTTTGAGTAGTGATATTTGAACAACTCTTTTGATACAATTTTTGGGACAACCTTGTTGTGTTCTCTTCTTATTGGTCAAAAACAATAGAGAGAGAAAGAGGAAGAGAGAGAATAAGAAGATAATATGAGTATGAGAGAGAAGGTTGTACAAAAGTTGTACAAAAATGGTTGTACAAATATCATTTCTCTTTTTGTTT

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