Plant MITE

SE2020708

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5910
Medicago truncatula
SE2020708
Mutator
M92
MtChr8:16301056-16301436
TAAAATATA
TAGGCTTAAACACACTTTTTACCTCCTATGTTTGAAAAAGTTGCAATTTTAGCCCCCTTTTAAAAAAAATGGCAAAAGTGGCCCCTCGTGTTTAGCCCCTTTTGCAAAACTCCAATTTTGACCTGGTCAACGCCATGT

Secondary structure and sequence

TSD TIR

5'

3'

TAAAATA           A                T     A                     C                                                                                 GTCA   CACT   - ATAAAAAGTTGTCAGCTGTATATTTTTTAATTTA
       TAGGCTTAAAC CACTTTTTACCTCCTA GTTTG AAAAGTTGCAATTTTAGCCCC TTTTAAAAAAAATGGCAAAAGTGGCCCCTCGTGTTTAGCCCCTTTTGCAAAACTCCAATTTTGACCTGGTCAACGCCATGT    AGC    CAG C                                  
       ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||    ||| |                                  A
       ATCCGAATTTG GTGAAAAATGGAGGAT CAAAC TTTTCAACGTTAAAATCGGGG AAAATTTTTTTTATCGTTTTCACTGGGGAGTACAAATCGGGGAAAACGTTTTGAGGTTAAAACTGGACCAGTTGCGGTACA    CCG    TGG A                                  
ATATAAA           C                T     G                     -                                                                                 ----   ----   A GTGAACTCACTCAACCTACGGTGCTCACATAAAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020708

TAAAATATAGGCTTAAACACACTTTTTACCTCCTATGTTTGAAAAAGTTGCAATTTTAGCCCCCTTTTAAAAAAAATGGCAAAAGTGGCCCCTCGTGTTTAGCCCCTTTTGCAAAACTCCAATTTTGACCTGGTCAACGCCATGTGTCAAGCCACTCAGCATAAAAAGTTGTCAGCTGTATATTTTTTAATTTAAAAAATACACTCGTGGCATCCAACTCACTCAAGTGAAGGTGCCACATGGCGTTGACCAGGTCAAAATTGGAGTTTTGCAAAAGGGGCTAAACATGAGGGGTCACTTTTGCTATTTTTTTTAAAAGGGGCTAAAATTGCAACTTTTGCAAACTTAGGAGGTAAAAAGTGCGTTTAAGCCTAAAATATA

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