SE2010711

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5913
  • Medicago truncatula
  • SE2010711
  • Tc1/Mariner
  • St11
  • MtChr5:5075164-5075425
  • TA
  • TACTCCCTCCGTCCCTGAATAAGTGACCTAGTTGACTCTGACACACGTACCAATGC

Secondary structure and sequence

TSD    TIR
5'



3' 
             C  G                   ---------------TC     C  --GT    A   -AT     TTATCTTTAATATCTTCAATTCTCTACTAAAAAAAATTATAAAAATTTAATATTTTAAA
TACTCCCTCCGTC CT AATAAGTGACCTAGTTGAC                 TGACA AC    ACCA TGC   ATGTT                                                           
||||||||||||| || |||||||||||||||||||                 ||||| ||    |||| |||   |||||                                                           A
ATGAGGGAGGCAG GA TTATTTACTGGATCAACTG                 ACTGT TG    TGGT ATG   AGATG                                                           
             A  A                   TTATATGTAATAACTGA     A  AAAC    -   AAA     ATTAAATGTTTCTATTTATTATAGTACATTCTACAACAACCTAAGCAGAGCTACTTATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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