Plant MITE

SE2030719

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5921
Medicago truncatula
SE2030719
hAT
Hat21
MtChr2:18066050-18066448
GTGGTGAT
T

Secondary structure and sequence

TSD TIR

5'

3'

  G G  GA  -      - TC   AA AATTCGGAGGCTCGGCTCTGAGAATGAAAAGAGGCCAGTGATAAAATCAAAACGTATTTTTTAAAAAAAAGCAATGATCTATTTATATTTTTTAAAAGATAAATATAAGGTGCCGTATATATGTGGTACACCCAAAGGTAAAAATGACTACTGTATACATGAGGAACTCCCACCTA
   T GT  TC AGGGCC G  CCT  G                                                                                                                                                                                
   | ||  || |||||| |  |||  |                                                                                                                                                                                 
   T GG  TG TCCGGG A  GAC  T                                                                                                                                                                                
TAG -  --  G      C GG   -- CCCCCACGTTTGTCGAGTTGTCTCGACCCGGAGGGAGTCAGTACCCGGAGTTAAAAAAAAAATTATGGGTAATCATGATGACGGGAGGTTTTTTTTAAATTATGGGGGTCGGTAAAAGACAGAGGAACAAAATCGGAAAATCCGGATAATCTTAATCCAGTAGAACGAAAACCACA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030719

GTGGTGATCAGGGCCGTCCCTAAGAATTCGGAGGCTCGGCTCTGAGAATGAAAAGAGGCCAGTGATAAAATCAAAACGTATTTTTTAAAAAAAAGCAATGATCTATTTATATTTTTTAAAAGATAAATATAAGGTGCCGTATATATGTGGTACACCCAAAGGTAAAAATGACTACTGTATACATGAGGAACTCCCACCTAACACCAAAAGCAAGATGACCTAATTCTAATAGGCCTAAAAGGCTAAAACAAGGAGACAGAAAATGGCTGGGGGTATTAAATTTTTTTTGGAGGGCAGTAGTACTAATGGGTATTAAAAAAAAAATTGAGGCCCATGACTGAGGGAGGCCCAGCTCTGTTGAGCTGTTTGCACCCCCTCAGGGACGGGCCTGGTGGTGAT

Copy Cancel