SE2020720

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5922
  • Medicago truncatula
  • SE2020720
  • Mutator
  • M37
  • MtChr1:20457273-20457470
  • TTAGGGAAA
  • AGGGAAATGCTAACAAGTGCCCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT    AAA                 AGGGCTA               AA  C      AGAAATTTTGTTT        ------      TCAATGCATTGAAATTTTAT
  AGGG   TGCTAACAAGTGCCCTT       AGGGCACTTGTTAAG  GT CAAAGA             TGGAAATG      GTGCAT                    
  ||||   |||||||||||||||||       |||||||||||||||  || ||||||             ||||||||      ||||||                    A
  TCCC   ACGATTGTTCACGGGAA       TCCCGTGAACAATTC  TA GTTTTT             ACCTTTAT      TTTAAA                    
AT    AGA                 -------               -C  T      -------------        TAACCA      AATTCATCTTTTTCAATGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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