Plant MITE

SE2020727

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5929
Medicago truncatula
SE2020727
Mutator
M2
MtChr4:20563030-20563231
TTGTAAATT
T

Secondary structure and sequence

TSD TIR

5'

3'

T   - AA  A   - TATGTGT     GTATTCCATTGGTAAAGGTGCGCCCTATTCAGGTGGGGAACTTATATTATTGAGCAATGATATTTGTACATCCATTCCATGACAACTTTAGTGACAACCTTGTTTTTCTCTC
 TGT A  TT ATC A       ATGGA                                                                                                                
 ||| |  || ||| |       |||||                                                                                                                T
 TAT A  TA CTC T       TACTA                                                                                                                
T   T --  T   T -------     TAAACATGTTGGTTAAACACTGTTGAAGACATGTTGAAAGAGAGAGTATGAGTGTACTACCAGAATAGGAGAGAGAAGGAAAAAGAGAGAGGTAACAAAAACTGGTTATTCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020727

TTGTAAATTAATCATATGTGTATGGAGTATTCCATTGGTAAAGGTGCGCCCTATTCAGGTGGGGAACTTATATTATTGAGCAATGATATTTGTACATCCATTCCATGACAACTTTAGTGACAACCTTGTTTTTCTCTCTTCTTATTGGTCAAAAACAATGGAGAGAGAAAAAGGAAGAGAGAGGATAAGACCATCATGTGAGTATGAGAGAGAAAGTTGTACAGAAGTTGTCACAAATTGGTTGTACAAATATCATTTCTCTATATTATT

Copy Cancel