Plant MITE

SE2020729

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5931
Medicago truncatula
SE2020729
Mutator
M119
MtChr4:24373496-24373697
TATTATATT
TATATTGGGTCATGTTAACTTGTGCCCTAAGGGCACAAGTTAAGGAGCT

Secondary structure and sequence

TSD TIR

5'

3'

TAT    -TT   TC                 AA                   TAAAA     ------AT     ATAAATTTTATATTGGAAGTATAACTTTT
   TATA   GGG  ATGTTAACTTGTGCCCT  GGGCACAAGTTAAGGAGCT     TAGAA        TAAAA                             
   ||||   |||  |||||||||||||||||  |||||||||||||||||||     |||||        |||||                              
   ATAT   CCC  TACAATTGAACACGGGA  TCCGTGTTCAATTCTTTGG     ATCTT        AACCT                             
 TT    TAT   TT                 AC                   TTTAC     CCAAAAAA     TGAACACGTAAGTTACAGAATTTTCAACG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020729

TATTATATTGGGTCATGTTAACTTGTGCCCTAAGGGCACAAGTTAAGGAGCTTAAAATAGAAATTAAAAATAAATTTTATATTGGAAGTATAACTTTTGCAACTTTTAAGACATTGAATGCACAAGTTCCAAAAAAAACCTTCTACATTTGGTTTCTTAACTTGTGCCTCAAGGGCACAAGTTAACATTTCCCTATTATATT

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