SE2020732

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5934
  • Medicago truncatula
  • SE2020732
  • Mutator
  • M66
  • MtChr7:18491851-18492131
  • TTATTTTAA
  • TAAGGCTTAATTGCACTTTTGACCTTCTATCTTTTCAAAAGTTGCGATTTTAGCCCTCTAACTAATTAAAATACAAAACAACCCCATATGTATTGGATCTTTGGCAGTTTTGGCCCCCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTATTT                    GA                             A                                 A                 GC              AAGTGGAAAGATAGG      AA
      TAAGGCTTAATTGCACTTTT  CCTTCTATCTTTTCAAAAGTTGCGATTTT GCCCTCTAACTAATTAAAATACAAAACAACCCC TATGTATTGGATCTTTG  AGTTTTGGCCCCCA               GGGTCA  
      ||||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||               ||||||   
      ATTCCGAATTAACGTGAAAA  GGGGGATAGAAAAGTTTTCAACGCTAAAA CGGGGGATTGATTAATTTTATGTTTTGTTGGGG ATACATAACCTAGAAAC  TCAAAACCGGGGGT               TCCGGT  
AATTTT                    AC                             C                                 G                 GA              ---------------      GA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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