Plant MITE

SE2020734

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5936
Medicago truncatula
SE2020734
Mutator
M4
MtChr1:18892464-18892770
AATTAATCA
GGGTTAATGGTGCTTTACCCCCCTGTAATATAGGTCATTTTTTATTTTCCCCCCTGTAAAATATTTTTTTTGATTTACCCCCTGTAAA

Secondary structure and sequence

TSD TIR

5'

3'

AATTAATCAAAAATAAAAA                      C                   TA      -                                -      -AAAAAAAAAATTT                               TTT     TTTT
                   GGGTTAATGGTGCTTTACCCCC TGTAATATAGGTCATTTTT  TTTTCC CCCCTGTAAAATATTTTTTTTGATTTACCCCC TGTAAA              AATACCCCCTAATAGGTCATAAAAAAACGAA   ATTTT    
                   |||||||||||||||||||||| |||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||| ||||||              |||||||||||||||||||||||||||||||   |||||     
                   CCCAATTACCACGAAATGGGGG ACATTATATCCAGTAAAAA  AAAAGG GGGGACATTTTATAAAAAAAACTAAATGGGGG ACATTT              TTATGGGGGATTATCCAGTATTTTTTTGCTT   TAAGA    
          AAAAATAAA                      -                   CC      A                                G      AAAAAATAAAAACC                               -TT     CGTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020734

AATTAATCAAAAATAAAAAGGGTTAATGGTGCTTTACCCCCCTGTAATATAGGTCATTTTTTATTTTCCCCCCTGTAAAATATTTTTTTTGATTTACCCCCTGTAAAAAAAAAAAAATTTAATACCCCCTAATAGGTCATAAAAAAACGAATTTATTTTTTTTTTGCAGAATTTTTCGTTTTTTTATGACCTATTAGGGGGTATTCCAAAAATAAAAAATTTACAGGGGGGTAAATCAAAAAAAATATTTTACAGGGGAGGAAAACCAAAAATGACCTATATTACAGGGGGTAAAGCACCATTAACCCAAATAAAAA

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