SE2020735

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5937
  • Medicago truncatula
  • SE2020735
  • Mutator
  • M50
  • MtChr2:27989402-27989776
  • AATAAAAAA
  • GGGTTAATATATGTTTACATGTAATATTAGTGATTTCCGGTTTACCCACTGAAAAAAAAATTGTTTAGATTCCAACCCTGTAATTTGAAGATTTTTTGATTTTGAACCTTCATG

Secondary structure and sequence

TSD    TIR
5'



3' 
AATAAAAAA                  --A                    G      CAC         AA           C                   TT     A     AAC       GCA       ACAAAATTTAAGGTACTTTCGCCCCTTGTAATTTGAAAGAATTTCGGTTTACCCCC
         GGGTTAATATATGTTTAC   TGTAATATTAGTGATTTCCG TTTACC   TGAAAAAAA  TTGTTTAGATT CAACCCTGTAATTTGAAGA  TTTTG TTTTG   CTTCATG   TCAAATT                                                        
         ||||||||||||||||||   |||||||||||||||||||| ||||||   |||||||||  ||||||||||| |||||||||||||||||||  ||||| |||||   |||||||   |||||||                                                        T
         CCCAATTATATACAAATG   ATATTATAATCACTAAAGGC AAATGG   ACTTTTTTT  AACAAATCTAA GTTGGGACATTAAACTTCT  AAAAC AAAAC   GAAGTAC   TTAAAAC                                                        
AAAAAATAA                  GGG                    -      AGA         -A           A                   -T     C     CTA       ---       TGACATGTTTTAGCTACTATACCATCCCACCATTTGGCTTTATAACTACTATACAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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