SE2020739

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5941
  • Medicago truncatula
  • SE2020739
  • Mutator
  • M144
  • AC235671:67623-67985
  • TTTAATTTT
  • GGCTAAATTGCATGTTCGGTTCCTTAAGTTTATTTTAGGTTTCATGTTGGTCCCCTACGTTTAGAAAGTTTCAAGTTGATCTCTTACGTCACTGATGTCAACATAAGTTCATCCTTTCCGTCAAATT

Secondary structure and sequence

TSD    TIR
5'



3'
 TTTAATTTT   T            C         A  T             AT       CC   C                    A       C       A   CA   -TA    C       CC        TTGAGTTAAC    C             ----      -CCC     A  TA
          GGC AAATTGCATGTT GGTTCCTTA GT TATTTTAGGTTTC  GTTGGTC  CTA GTTTAGAAAGTTTCAAGTTG TCTCTTA GTCACTG TGT  ACA   AGTT ATCCTTT  GTCAAATT          TCTG CTAAAACATTCAC    GTGGCA    TGCAA GT  
          ||| |||||||||||| ||||||||| || |||||||||||||  |||||||  ||| |||||||||||||||||||| ||||||| ||||||| |||  |||   |||| |||||||  ||||||||          |||| |||||||||||||    ||||||    ||||| ||  T
          CCG TTTAACGTGCAA CCAGGGAAT CA ATAAAATCCAAAG  CAACCAG  GAT CAAATTTTTCAAAGTTTAAC AGGGAAT CAGTGAT GCA  TGT   TCGA TAGGAAA  CAGTTTAA          AGGC GATTTTGTAGGTG    CATTGT    GCGTT CA  
TTTTTAATTT   T            A         A  T             CT       TA   T                    C       A       C   -A   TAA    T       AT        ----------    A             GACT      CTCT     G  CC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End