Plant MITE

SE2020745

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5947
Medicago truncatula
SE2020745
Mutator
M136
MtChr3:28892851-28893060
ATGAAAAAA
GGG

Secondary structure and sequence

TSD TIR

5'

3'

ATGAAAAAA   TCTTT              A         -    AAAAACTAAATAA    ATTT  TCTTGAAAATTGTGCATTCATAACCTTAAAAGTTAAAAAATTTAT
         GGG     TTAACTTGTGCCCT AGGGCACAA GATA             AGAA    GA                                             
         |||     |||||||||||||| ||||||||| ||||             ||||    ||                                              
         CCC     AATTGAACACGGGA TCCTGTGTT CTGT             GTTC    TA                                             
AAAAAAGTA   TTTAC              A         T    -------------    ----  TTCTTAGAATTTTATCTTAATTTGTTATTTTTAACATAACTTTTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020745

ATGAAAAAAGGGTCTTTTTAACTTGTGCCCTAAGGGCACAAGATAAAAAACTAAATAAAGAAATTTGATCTTGAAAATTGTGCATTCATAACCTTAAAAGTTAAAAAATTTATCTTTTCAATACAATTTTTATTGTTTAATTCTATTTTAAGATTCTTATCTTGTGTCTTTGTGTCCTAAGGGCACAAGTTAACATTTCCCATGAAAAAA

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