Plant MITE

SE2030747

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5949
Medicago truncatula
SE2030747
hAT
Hat12
MtChr3:5419867-5420544
TTTTTAAC
TAGGGGTGT

Secondary structure and sequence

TSD TIR

5'

3'

TTTTTAAC           G     CG     GT ----      TCA        -----      -         AGATAAAAAAGCATGCGGT   -    GGTTCGGTTGATTTTTAAAAAGTCATCCAAACCAAACCAATGCGGTTTGGATTGATTCGGTTTGTGCGGTTTATCGCGAGATAAAAAATATTACATTAACTCTAATATTGCCAACTTATTACAAAATAAACATAGGGCATTTTATTTTGTTGTTTATATGATAAAATATTAGGTAAAACTTATATCAAAATAGGTAAAATTAAGAAGAAATATAAGCATGAAACAAATTATTGGGAAGAAAAGGAAACAAATTC
        TAGGGGTGTTT CGATG  GTTTG  T    CGGTTT   GCATAAAA     GTCATC CAAACCGCG                   TTG GTTT                                                                                                                                                                                                                                                              
        ||||||||||| |||||  |||||  |    ||||||   ||||||||     |||||| |||||||||                   ||| ||||                                                                                                                                                                                                                                                               
        ATCCCCACAAG TTTTG  GCTTG  G    GTTATC   TTTTTGGC     GTTTGG TAGGTTTGG                   TTT GTCG                                                                                                                                                                                                                                                              
CAATTTTT           -     --     -- TTGG      ---        GTTTA      T         -------------------   T    TTTTTTGGTGTGAACCAAGCCTACTTAAGCCTACTGAAAACGTGACTTGGCGCTCCAAACCAAGCCAAACGCCAAACGTAGAGTCGATGGCTTGGTTTGGTTTGGTTTGGCGTTCTTATTACTTACAATGAATTTGTACATGATCGGGTTAATGTATCGGGTTCTTATTAGAGAAAACTAAGCTAAAAAGGTAACAACGTGGTAGTCCAAGTTAAGATTAAGGAAAGGTAGAGAAAATTAAGTAAAGGTCACTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2030747

TTTTTAACTAGGGGTGTTTGCGATGCGGTTTGGTTCGGTTTTCAGCATAAAAGTCATCCAAACCGCGAGATAAAAAAGCATGCGGTTTGGTTTGGTTCGGTTGATTTTTAAAAAGTCATCCAAACCAAACCAATGCGGTTTGGATTGATTCGGTTTGTGCGGTTTATCGCGAGATAAAAAATATTACATTAACTCTAATATTGCCAACTTATTACAAAATAAACATAGGGCATTTTATTTTGTTGTTTATATGATAAAATATTAGGTAAAACTTATATCAAAATAGGTAAAATTAAGAAGAAATATAAGCATGAAACAAATTATTGGGAAGAAAAGGAAACAAATTCATCACTGGAAATGAATTAAAAGAGATGGAAAGGAATTAGAATTGAACCTGATGGTGCAACAATGGAAAAATCGAATCAAAAGAGATTATTCTTGGGCTATGTAATTGGGCTAGTACATGTTTAAGTAACATTCATTATTCTTGCGGTTTGGTTTGGTTTGGTTCGGTAGCTGAGATGCAAACCGCAAACCGAACCAAACCTCGCGGTTCAGTGCAAAAGTCATCCGAATTCATCCGAACCAAGTGTGGTTTTTTGCTGTTTTGGTTTGGATTGGTTTGATTTGCGGTTTTTCTATTGGGTTGGTTCGGTTTTGAACACCCCTATTTTTAAC

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