SE2030749

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5951
  • Medicago truncatula
  • SE2030749
  • hAT
  • Hat14
  • MtChr2:21174880-21175410
  • GACATAAT
  • CTATGAAGCATGGACTCC

Secondary structure and sequence

TSD    TIR
5'



3' 
GACATAAT               T  AACACGAACA    A  CGACACTGACACGGACACGTCGACACCGCTAATGTAAAAAATATAGGACACCGACACCATTAAATATATGTTAATTTATTTAAAGACGGTCTAAAATGAAAATTAAAATACATATATAAACATCTAACTTGAGCAATTTATGTCATTAGAAAAAGTTCTACAACAAGATATCATAGTATTTGACCTTTATTTATTCATCTACTATCAAAAAAGCTAAAAACGATATAA
        CTATGAAGCATGGAC CC          CCTG CA                                                                                                                                                                                                                                    
        ||||||||||||||| ||          |||| ||                                                                                                                                                                                                                                     
        GATACTTCGTGCCTG GG          AGAT CC                                                                                                                                                                                                                                    
TAATAGAG               T  ----------    -  TGATCCGCACAGCGCCACAGGCTGTGCACAGCTTGACCACAGGATTTATTAACTAAAAAAGAAATGAAGCTGTGAGGATGCTAGCCACGGGTTGTGGATATATTGTCAGTATGCTCGGCACAGCCTGTTGAGTCTTTTTATAGATTTTGTTAAAAAAGAGAGAGAACGAAGGCGTGCGGTACCTATGTTCTCAATGTATACAAAACTCTTTACGACTAGTTAATTACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3