Plant MITE

SE2010751

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5953
Medicago truncatula
SE2010751
Tc1/Mariner
St23
MtChr5:5574854-5575128
TA
TACTCCCTCCGGTCTCAAATGTAGGGGAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

                                A    GCACATCAATTAAAAAAATGAATTGATTACATTGAAATCATGTTAAAAAATGTACAACTTTCTAATTTTGCCCTTGTCATGTTTTAGTAATAATTAATAAA
TACTCCCTCCGGTCTCAAATGTAGGGGAAAAA AAAA                                                                                                     
|||||||||||||||||||||||||||||||| ||||                                                                                                      
ATGAGGGAGGCCAGAGTTTACATCCCTTTTTT TGTT                                                                                                     
                                -    TTTTTTAACACCAGAGTTTACATTCTTTTTCATATCATTTTCGTTGGATTATTTACGATGATAAGGTTAAAATGGGATAGAGGTACTCAAGTTTTCAGTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2010751

TACTCCCTCCGGTCTCAAATGTAGGGGAAAAAAAAAAGCACATCAATTAAAAAAATGAATTGATTACATTGAAATCATGTTAAAAAATGTACAACTTTCTAATTTTGCCCTTGTCATGTTTTAGTAATAATTAATAAAAGTGACTTTTGAACTCATGGAGATAGGGTAAAATTGGAATAGTAGCATTTATTAGGTTGCTTTTACTATACTTTTTCTTACATTTGAGACCACAATTTTTTTTGTTTTTTTCCCTACATTTGAGACCGGAGGGAGTA

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