Plant MITE

SE2020755

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5957
Medicago truncatula
SE2020755
Mutator
M120
AC235094:44022-44789
CTGTCTTTA
GGTGGCATTTAATTTGGGAAAGGCTAGTTTTTTCCCACCATGGGAAAGCTTTTTCTGACCATTGGATCTAATAAAGAACACATCTTTATCATGAACTCTCAGTATCAAATCTCCCTCACTTTTTCTCCCCACCTCCTCCCAACAACAAACTTCCTTCCACACCATCGGTGGCACCTACTCTTCCACCACCACCACCCCGTTCCCCAATAAATGGATCAACCCAATAAAT

Secondary structure and sequence

TSD TIR

5'

3'

CTGTCTTTA      A                                               C                                                            T           C                                                                      G                              AT     -    -- C  GTTTCTCAGTAAAGGTTGAAGCTTTTTCAAGAACAGAGTGGTATCCATGATGAATGAGCAGCCATTGATGGAGGTGAGGGAAGATTTCATGATCTCACCAACTGGTCACAGTGAAGCAACTCTTAGAATGG
         GGTGGC TTTAATTTGGGAAAGGCTAGTTTTTTCCCACCATGGGAAAGCTTTTT TGACCATTGGATCTAATAAAGAACACATCTTTATCATGAACTCTCAGTATCAAATCTCCC CACTTTTTCTC CCACCTCCTCCCAACAACAAACTTCCTTCCACACCATCGGTGGCACCTACTCTTCCACCACCACCACCCC TTCCCCAATAAATGGATCAACCCAATAAAT  CTCAT TCAT  C TT                                                                                                                                   
         |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||| ||||  | ||                                                                                                                                    
         CCACCG AAATTAAACCCTTTCCGATCAAAAAAGGGTGGTACCCTTTCGAAAAA ACTGGTAACCTAGATTATTTCTTGTGTAGAAATAGTACTTGAGAGTCATAGTTTAGAGGG GTGAAAAAGAG GGTGGAGGAGGGTTGTTGTTTGAAGGAAGGTGTGGTAGCCACCGTGGATGAGAAGGTGGTGGTGGTGGGG AAGGGGTTATTTACCTAGTTGGGTTATTTA  AGTAA GAGA  A CC                                                                                                                                   
ATTTCTGTC      C                                               A                                                            C           A                                                                      G                              --     A    AC -  CACTGCGGTAGGTAACTTTACCTTAAAGTTTCCGGTGAGTAAACCTAGTTTGTGTATTCTGTTACTACTACCCAATTTTGGTTTTCCACTACCAAGTATTTACCTTAAACTTTACCCAAAATCTTTTACTC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2020755

CTGTCTTTAGGTGGCATTTAATTTGGGAAAGGCTAGTTTTTTCCCACCATGGGAAAGCTTTTTCTGACCATTGGATCTAATAAAGAACACATCTTTATCATGAACTCTCAGTATCAAATCTCCCTCACTTTTTCTCCCCACCTCCTCCCAACAACAAACTTCCTTCCACACCATCGGTGGCACCTACTCTTCCACCACCACCACCCCGTTCCCCAATAAATGGATCAACCCAATAAATATCTCATTCATCCTTGTTTCTCAGTAAAGGTTGAAGCTTTTTCAAGAACAGAGTGGTATCCATGATGAATGAGCAGCCATTGATGGAGGTGAGGGAAGATTTCATGATCTCACCAACTGGTCACAGTGAAGCAACTCTTAGAATGGCTCATTTTCTAAAACCCATTTCAAATTCCATTTATGAACCATCACCTTTTGGTTTTAACCCATCATCATTGTCTTATGTGTTTGATCCAAATGAGTGGCCTTTGAAATTCCATTTCAATGGATGGCGTCACCCACAAGAGAAATGAATTTATTGGGTTGATCCATTTATTGGGGAAGGGGGTGGTGGTGGTGGAAGAGTAGGTGCCACCGATGGTGTGGAAGGAAGTTTGTTGTTGGGAGGAGGTGGAGAGAAAAAGTGCGGGAGATTTGATACTGAGAGTTCATGATAAAGATGTGTTCTTTATTAGATCCAATGGTCAAAAAAAGCTTTCCCATGGTGGGAAAAAACTAGCCTTTCCCAAATTAAACGCCACCCTGTCTTTA

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