SE2030762

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5964
  • Medicago truncatula
  • SE2030762
  • hAT
  • Hat41
  • MtChr7:32891253-32891831
  • ACAACACT
  • TTAGGGGTGGAAATAGGCTAGGCTG

Secondary structure and sequence

TSD    TIR
5'



3' 
ACAACAC          A              A  TGAGCTTTGTAAGGCCTAAGCCTGACCTACTTCAAAAATTATACGGCTGAGCCTGGCCTATTACCTGTCATAGGCTTATTTTCGAGGTCTGACCTGGCCTTTTTAAAGGTCTGATGAAGTCTGAAAGCCTATTTAGAAGCCTATTTTACACTAAGGCCTAACAACACATGTAAGCCTAATACTAAATAGGCCAAAACTTATGAAGGTCTAAAGCACACAAATATGTTTGCTACTAATTATTGAGAAGGTCTAAT
       TTAGGGGTGG AATAGGCTAGGCTG GC                                                                                                                                                                                                                                                              
       |||||||||| |||||||||||||| ||                                                                                                                                                                                                                                                              C
       AATCCCCACC TTGTCCGGTCCGGC GG                                                                                                                                                                                                                                                              
TCACAAC          C              A  CTGTCCCCGGATGACAGATCAGATAAATTTCAGATCGAGCCGGGTCGATCAAATAATTGTTCCAGTCTGAGTTCGAAAAATAATCCGGACAAATCAATTTATCCGATCCGATTCCGAATGTGTTTTCGGATAATTCGGGCAGTCCCGCCGGATAATTCTAAAAATATATATTATATAGAAGGTAATAACTATAACAACTTCAAAGAAGGAGTATTTGAATACTAACCAATAAATCATCGTTCCATATAATCACA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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