Plant MITE

SE2050764

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5966
Medicago truncatula
SE2050764
PIF/harbinger
To16
MtChr1:1255313-1255658
TAA
AGGGTGTGTTTGGTTTGCAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TA                  A   CAGC    ACT      AACA    AAGATAGAACAGTACAACACAAGGCAGAACAGCACAGGACAAATTTTTTATGGCATTGAGTAATTTTTTGTTTTATACGATTTTTGAGGGACAAAATGCTATTTTGGTATTTTAGACAACTTGTACGT
  AGGGTGTGTTTGGTTTGC AAA    AAGT   GGACAG    GTAC                                                                                                                                
  |||||||||||||||||| |||    ||||   ||||||    ||||                                                                                                                                 
  TCCCACGCAAACTAAACG TTT    TTTA   CCTGTC    CTGT                                                                                                                                
AA                  A   ----    CTT      ----    CTTGTTGAGATCAACAGGTCACAAACTAAACATTTTGACAAAGTCCATGTCCTGTTTGATCTCCGTTCCCTGTCCTGTTTTTGAGTATAAAAACAGGGAGTGGTTTGGTGTCGTGTTGAAAAACAGGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2050764

TAAGGGTGTGTTTGGTTTGCAAAACAGCAAGTACTGGACAGAACAGTACAAGATAGAACAGTACAACACAAGGCAGAACAGCACAGGACAAATTTTTTATGGCATTGAGTAATTTTTTGTTTTATACGATTTTTGAGGGACAAAATGCTATTTTGGTATTTTAGACAACTTGTACGTGGGACAAAAAGTTGTGCTGTGGTTTGGTGAGGGACAAAAATATGAGTTTTTGTCCTGTCCCTTGCCTCTAGTTTGTCCTGTACCTGAAACAGTTTTACAAATCAAACACTGGACAACTAGAGTTGTTCTGTCCTGTCCTTCATTTTTTAGCAAATCAAACGCACCCTAA

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